Publications by year

2015  2014  2013  2012  2011  2010  2009  2008  2007  2006  2005  2004  2003  2002  2001  2000  1999  1998  

Most documents on this website are protected by copyright. By clicking on a PDF icon, you confirm that you or your institution has the right to do so. Note that the definitive versions of all EG papers (Eurographics,...) can be downloaded from ACM papers (Siggraph, ...) can be downloaded from


“GPU-powered tools boost molecular visualization”
Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nominé, Thomas Ertl and Marc Baaden
Briefings in Bioinformatics, 2011

Abstract: Recent advances in experimental structure determination provide a wealth of structural data on huge macromolecular assemblies such as the ribosome or viral capsids, available in public databases. Further structural models arise from reconstructions using symmetry orders or fitting crystal structures into low-resolution maps obtained by electron-microscopy or small angle X-ray scattering experiments. Visual inspection of these huge structures remains an important way of unravelling some of their secrets. However, such visualization cannot conveniently be carried out using conventional rendering approaches, either due to performance limitations or due to lack of realism. Recent developments, in particular drawing benefit from the capabilities of Graphics Processing Units (GPUs), herald the next generation of molecular visualization solutions addressing these issues. In this article, we present advances in computer science and visualization that help biologists visualize, understand and manipulate large and complex molecular systems, introducing concepts that remain little-known in the bioinformatics field. Furthermore, we compile currently available software and methods enhancing the shape perception of such macromolecular assemblies, for example based on surface simplification or lighting ameliorations.

BibTex reference

   TITLE      = "GPU-powered tools boost molecular visualization",
   AUTHOR     = "Matthieu Chavent and Bruno Lévy and Michael Krone and Katrin B
                   idmon and Jean-Philippe Nominé and Thomas Ertl and Marc Baaden",
   JOURNAL    = "Briefings in Bioinformatics",
   YEAR       = "2011",