Mesh Repair
Scanned meshes often have complicated topology, holes, poorly shaped triangles. This makes it difficult to use them in geometry processing. This tutorial shows how to use Graphite to fix such meshes.
1) Load a model in Graphite
For instance, you can use this one (courtesy of Eurographics, see this page for credits and terms of use).
You can see some red dots on the model, they correspond to non-manifold vertices that were detected by Graphite. This was fixed already by Graphite's file import. Let us see now what remains to be fixed.
2) Visualize the model
In the Shader pane (right)
border style->on

The yellow lines correspond to borders, i.e. holes that need to be filled.
Mesh->display mesh topology
In the status bar, we see that this object has 20 parts and 110 borders.
3) Repair the model
Mesh->global->auto repair
min component size: 10000 (parts with less than 10000 triangles will be removed)
max hole size: 10000 (holes with less than 10000 edges will be filled)
relax border width: 3 (Laplacian smoothing will be applied to 3 rings of neighbors around the holes)
Mesh->display mesh topology

Now our mesh has a single part, without any border, and is topologically equivalent to a sphere. This is much better, but still not perfect (see below).
4) Manual improvement
Near the tail, there is an artifact.

One of the holes has a complex shape, that the automatic algorithm does not manage to fill-in appropriately. Let us fix it.
Tools pane (right)
Select the Anchors tool
Click on the unwanted shape several times (see image below)
Seletec the Hand tool

Mesh->lock/unlock->grow locks
nb iter: 20
You can adjust the size of the region to process, by using grow locks / shrink locks with 1 iter.

Mesh->lock/unlock->invert locks
Shader pane
mesh style: on

Mesh->optimizer->optimize geometry

5) Global remesh
Mesh->remesh->remesh
target edge length: -200 (use -100 for larger triangles)

The result can be downloaded here.